Sometimes field work can look a little unconventional, like using large screened tents for a mosquito repellent trial. This original (yet ultimately unsuccessful) idea came from some work I did at the Guelph Turfgrass Institute in 2011.
Another field season has come and gone (mostly, I bet there are some field crop entomologists still out collecting data), and the entomology conference season will soon be upon us. But before you wrap yourself up in a nice warm cocoon of fresh data in preparation for the coming winter, we’d love to hear how your summer went!
The only thing better than obtaining exciting new data is the great story about how you got it! Maybe you traveled to a new location (or had an adventure on the way to your normally-mundane field site), met some interesting new people, took some photos you’re proud of, or did your best MacGyver impression by rigging your equipment together using only duct tape, dental floss and that perfectly shaped twig you found. Being the start of a new semester, maybe you’ve started a new project or joined a new lab and want to introduce yourself, your work, and put out a call for specimens.
Whatever your situation, the ESC Blog is a great place to share your story and earn the adoration of your peers for heroics and valor in the face of p > 0.05! Simply send us an email (firstname.lastname@example.org) with your story (and a few pictures if you can) and we’ll help bring your story to the masses.
We know you’ll be swapping stories with newfound friends over beer at the ESC meeting in a few weeks, so hopefully you’ll consider sharing them with everyone a little sooner. We promise, we’ll ooh & ahh at all the appropriate moments (and not tell your advisor how the dent in the rental truck really got there)!
https://esc-sec.ca/wp-content/uploads/2012/09/field-of-trials20110928.jpg650500Morgan Jacksonhttp://esc-sec.ca/wp/wp-content/uploads/2017/01/ESC_logo-300x352.pngMorgan Jackson2012-09-26 00:06:162019-11-14 20:22:52How was your summer?
By Chris Buddle
Authorship on written work should never be taken lightly. Authorship implies ownership and responsibility for the ideas and content portrayed as the written word. In science, our currency is the written word, in the form of peer-reviewed articles submitted and published in scientific journals, and multi-authored works are the norm (sometimes to ridiculous degrees!). Being an author on a paper is critically important for success in academia: the number of publications on your CV can get you job interviews, scholarships, and often leads to increased research funding. Scientists are often judged by publication metrics, and although we may not like this system, it remains prevalent. With this context I pose the following question: What is the process by which an individual is granted the privilege of being an author on a peer-reviewed journal article? This blog post will provide an objective method to determine authorship for a publication, and by sharing it, I hope it helps bring some clarity to the issue.
(Note: as a biologist, I am drawing from my experiences publishing in the fields of ecology and entomology, and in my role as the Editor-in-Chief for a scientific journal, The Canadian Entomologist– the ideas presented below may not be transferable to other fields of study).
A paper that resulted from a graduate class; should all these individuals be authors on this paper? (yes, of course!)
The method outlined below starts by thinking about five main stages in the publication process, and there are individuals associated with each stage:
1. Research concept, framework, and question: The research process leading to a publication has a conceptual backbone – it is the overarching research framework. The background ideas and concepts that initiate the research that leads to a publication come from somewhere (…and someone). Although the end product of research may be the publication, a good research question is at the start, and drives the entire process. Without a solid framework for research, and a clear question, the research will simply never be in a form suitable for publication. The person (or people) who developed the big-picture ideas, research framework, and research question are to be considered as authors on the final publication. In the University framework, this is often an academic who has developed a laboratory and research program around a thematic area of study.
2. Funding. Someone has to pay for research – whether it be a large, collaborative research grant that supports many graduate students, or whether it be a small grant from a local conservation agency. An individual scientist applied for money, and was able to support the research that leads to the publication. These monies could directly support the research (e.g., provide travel funds, purchase of equipment), the individual doing the research (e.g., pays the graduate student stipend, or technician), or the monies could offset the costs associated with the publication process itself (e.g., many journals charge authors to submit their work, also known as page charges). The individual(s) who pay for the research need to be considered as authors on the final publication resulting from the research. More often than not, this individual is the main “supervisor” of a research laboratory, but could also be important collaborators on grant applications, often from other Universities or Institutions.
3. Research design and data collection: Once the overall research question is in place, and funding secured, the actual research must be designed and executed. These are placed together under one heading because it is difficult to separate the two, nor should they be separated. You cannot design a project without attention to how data are collected, nor can you collect data without a clear design. In a typical University environment, Master’s and PhD students are intimately associated with this part of the research equation, and spend a very significant portion of their time in design and data collection mode. Without a doubt, the individual(s) who “design and do” the research must be considered as authors.
4. Data analyses, and manuscript preparation: The next step in the process is taking the data, crunching the numbers, preparing figures and tables, and writing a first draft of the manuscript. This is a very important step in the process, as this is the stage where the research gets transformed into a cohesive form. In a typical University laboratory, this is often done by Master’s students, PhD students, or post-docs, and the product of this stage is often (part of) a graduate student’s thesis. However, it is also quite likely that a research associate, technician, or Honour’s student be involved at this stage, or that this stage is done by multiple individuals. For example, data management and analyses may be done by a research technician whereas the head researcher does the bulk of the synthetic writing. Regardless, one or many individuals may be involved in this stage of the publication process, and all of these people must be considered as authors on the final product.
5. Editing, manuscript submission, and the post-submission process: The aforementioned stage is certainly not the final stage. A great deal of time and effort goes into the editing process, and quite often the editing and re-writing of manuscripts is done by different individuals than those who wrote the first draft. Important collaborators and colleagues may be asked to read and edit the first draft and/or other students within a laboratory may work to fine-tune a manuscript. Most likely, the supervisor of a graduate students invests a lot of time and energy at this stage, and works to get the manuscript in a form that is ready to be submitted to a scientific journal. The submission process itself can also be difficult and daunting – papers must be formatted to fit the style requirements for specific journals, and the on-line submission process can take a long time. After the manuscript has been submitted and reviewed by peers, it will most likely return to authors with requests for revisions. These revisions can be lengthy, difficult, and require significant input (perhaps from many individuals). For all these reasons, this fifth stage of the publication process cannot be undervalued, and the individual(s) associated with editing, submitting and dealing with revisions must be considered as authors.
Those five categories help define the main stages that lead to a scientific publication, and there are individuals associated with each stage. Here’s the formula to consider adopting when considering which individuals should be authors on the final product: if an individual contributed significantly to three or more of the above stages, they should be an author on the final paper. Here’s an example: in a ‘typical’ research laboratory, the supervisor likely has a big-picture research question that s/he is working on (Stage 1) and has secured funding to complete that project (Stage 2). A Master’s student, working with this supervisor, will work on the design and collect the data (Stage 3), and as they prepare their thesis, will do the bulk of the data analysis and write the first draft of the paper (Stage 4). In most cases, the editing and manuscript submission process is shared by the supervisor and the student, and both individuals are likely involved with the revisions of the manuscript after it has been peer-reviewed (Stage 5). In this case, both individuals clearly contributed to at least three of five categories, and the paper should be authored by both individuals.
A classic example of a paper with a graduate student and supervisor as co-authors.
What about the research assistant that helped collect data? – since they only contributed to Stage 3, they are not considered as an author. The same is true of a collaborator at a different University who may have helped secure the funding (Stage 2), but did not help with the process in any other way – they do not qualify as authors on this work. It is quite possible that a post-doc in a laboratory contributes to multiple stages, even on a single Master’s project. For example, the post-doc may have helped secure the funding, assisted significantly with data analysis, and helped to edit the final paper – this entitles them to authorship.
This entire method may be considered too rigid, and cannot really be implemented given the complexities of the research process, and given personalities and politics associated with the research process. Furthermore, many researchers may include their friends on publications, in hopes that the favour will be returned so both individuals increase their publication numbers. I do not think this is ethical, and overall, if an individual did not contribute to the research process in a significant way, they should not be authors. The method outlined above provides one way to help determine how this ‘significant way’ can be determined objectively. The process is certainly not without fault, nor will it work in all circumstances, but perhaps it will help to define roles and help to consider seriously who should be considered as authors on papers.
I can also admit that I have not always contributed to “3 of 5 stages” on all the paper for which I am an author, so you can call me a hypocrite. That’s OK, (I’ve been called worse), and I reiterate that the process outlined above is context-dependent, and simply provides a framework, or guide, for thinking about this important issue in science.
I am certainly not alone in this discussion, nor with this concept – Paul Friedman wrote about this (in A New Standard for Authorship) and the method in analogous to the one outlined above (although with more categories). Some journals also specify their expectations for authorship. As an example, in its instructions to authors, PNAS states that ‘Authorship should be limited to those who have contributed substantially to the work’, and request that contributions be spelled out clearly. This is a good idea, and forces people to think about the issue.
I’ll finish with two more important points: First, determining authorship, and thinking about authorship, must be a transparent and clear process. Graduate students must not be surprised when their supervisor states that some other researcher will be an author on their work – this should have been clear from the start. A discussion about authorship must occur early in the research process. Full stop.
Second, another key question is the order of authors. For example, when is the student’s name first on a publication, and the supervisor second? What’s the convention for your field of study? Who should be second author when there are four or five co-authors? This is a complicated question and, you guessed it, one that will be addressed in a future blog post!
Please share your thoughts… how does your laboratory deal with the question of authorship on scientific papers?
By Brent Sinclair, University of Western Ontario
I’m currently on sabbatical in the Department of Zoology, University of Otago in Dunedin New Zealand. This is the department where I did my PhD, so it is an opportunity to come back to familiar territory and re-connect with all sorts of people and places from the past. It’s not a very insect department, but there is a lot of interesting work on ecology, parasites and freshwater biology. A sabbatical is all about recharging scientific and creative batteries, so my main goal here is to write and read and think (and drink coffee and run and hike – but that’s for a different blog), but I felt that I also needed to justify coming all this way by actually gathering some data while I’m here. Respirometry is the perfect answer – once set up, it’s possible to gather data on metabolic rates, breathing patterns and water loss at the expense of only a few minutes at each end of a run, leaving plenty of space for writing and drinking New Zealand’s excellent coffee in between.
What is respirometry?
Respirometry is the science (art?) of measuring the products and substrates of respiration – depending on your strategy, you can measure oxygen consumption and/or carbon dioxide production (to get a handle on metabolic rate) and water loss – among other things. Because I work on generally small insects at generally low temperatures, we mainly measure carbon dioxide production and water loss (the instruments are much more sensitive), and can do some clever calculations to turn this into estimates of metabolic rate.
The equipment itself can look quite intimidating – and certainly like Science – with plenty of tubes and wires (when I calibrate the water channel, there’s even a bubbling flask!), but it’s not that difficult once you figure out what everything is doing, and it looks scary enough that other people generally don’t mess with it. We pass CO2-free, dry air over an insect, and measure the CO2 and water vapour in the excurrent air – all the CO2 and water vapour must have come from the insect, so we can calculate how much it is breathing out. The equipment we use is from a company in Las Vegas called Sable Systems International. Sable Systems’ head honcho, John Lighton, is an insect physiologist who has published in places like Nature and PNAS, which means that when he designs the equipment, he often has insects in mind.
The respirometry system set up in a controlled-temperature room at the University of Otago. CO2-free dry air is supplied by the gas cylinder, and passes through a chamber containing the insect housed in a temperature-controlled chamber (the big grey cooler box), before going on to an infra-red gas analyser (the green box), which uses IR absorbance to measure CO2 and H2O.
What else can we learn from respirometry?
As well as a simple measure of metabolism, it is possible to use respirometry to determine the thermal sensitivity of metabolism (this is important in understanding the effects of climate change), as well as the metabolic costs of various environmental stresses, like freezing or chilling. We can also use respirometry to study how insects breathe (there is much debate surrounding the adaptive significance of the Discontinuous Gas Exchange Cycles observed in some insects), and we can also use respirometry to figure out how much water is being lost across the cuticle of insects – even small ones like individual flies!
What am I …er… respirometing?
After 65 million years of evolution without mammals, New Zealand has an amazing array of endemism and some pretty weird insects. My favourites are the alpine insects, which include impressive radiations of cockroaches, stick insects and weta – large Orthoptera related to the Jerusalem crickets of North America. The mountains are fairly young (<3 million years old), so it’s possible to do all sorts of work comparing alpine species with their lowland relatives .
A group of alpine weta, Hemideina maori found under a stone at 1400 m a.s.l. on the Rock and Pillar Range, Central Otago, New Zealand. The males defend harems of 2-7 females. Female weta can weigh over 5 g, and males over 7 g, making them the heaviest insect known to survive internal ice formation. Photo by B. Sinclair.
Of course, it is the most fun to work on the big, weird insects. So far I’ve been putting alpine weta (Hemideina maori, Orthoptera: Anostostomatidae) and New Zealand’s longest insect, the gloriously-named phasmid Argosarchus horridus through their paces. Male alpine weta can weigh up to 7 g, and are the largest insect species known to withstand internal ice formation. The stick insects can easily reach 4 g, and posed some unique challenges in respirometry – with a body form so long and stick-like, it makes perfect sense to use a converted spaghetti-storage container!
A large female Argosarchus horridus (this one weighs a shade over 3 g) ready to go in her respirometry chamber. Photo by B. Sinclair.
The main questions I will be addressing will be about the evolution of thermal sensitivity and water loss in alpine insects, but the great thing about respirometry is that I never know what I’ll find along the way!
https://esc-sec.ca/wp-content/uploads/2012/09/sinclair-1.jpg450600Crystal Ernsthttp://esc-sec.ca/wp/wp-content/uploads/2017/01/ESC_logo-300x352.pngCrystal Ernst2012-09-17 11:20:432019-11-14 20:22:49Here be giants. How do they breathe?
As mentioned in a previous post, the Entomological Society of BC has been working hard to improve the Society’s impact by enhancing our online presence to reach more people in BC, as well as the rest of Canada and the world. We’ve undertaken a massive project to digitize our entire journal archive, and are in the process of moving all 108 volumes of the Journal of the ESBC online (plus occasional papers, supplementary reports, and the Quarterly Bulletins dating back to 1906!).
This project will provide unprecedented public access to the Society’s publications, and you can help! With scanning and OCR completed, we need to extract the metadata for each article, including the abstracts and references, so that we can import them into our new online journal system (link to http://journal.entsocbc.ca). We are recruiting volunteers to assist with this step, as well as creating cover images from the scanned volumes.
Flexible and easy;
Can be done from anywhere (you don’t have to live in BC!);
Opportunity to explore the history of entomology in BC;
Work closely with ESBC journal and web editors;
Contribute directly to the establishment of a permanent, online, open-access repository of entomological knowledge in BC;
Ideal for students or anyone with an interest in entomology and community service.
Contact Alex Chubaty (email@example.com) if you are interested in contributing time towards this project.
As the new web editor of the Entomological Society of British Columbia (ESBC), last fall I began a push toward the digitization of all past issues of the Journal of the ESBC and the implementation of an online journal management system. At the time, only a relatively few issues of JESBC were available online, with only the most recent issues available as PDFs. None of these were easily searchable, nor were these issues indexed on our site, Google Scholar, or other search engines.
Over the years, each editor handled submissions in a slightly different way, via email (or post!), and copies of digital files were not retained by the society, but rather by individual editors. Additionally, we used an annual submission deadline, which resulted in annual “publication push” that resulted in a single “crunch time” leading up to year’s end.
It was with these limitations in mind that I spearheaded an effort to simplify the submission, editorial, and publication processes, and to provide truly open access to our entire journal archive in an effort to increase our journal’s profile, readership, and citations.
Over the past several months (and still ongoing), in conjunction with the SFU library and the Public Knowledge Project, the ESBC began our transition to our new online journal management system and the scanning and uploading of all volumes of the JESBC. Our choice of journal management system was based on several important criteria: cost, features, ease-of-use, robustness, “future-proofing”, and support.
In the interest of brevity, I won’t go into all of the details here, but from our choices of journal management systems, the clear winner was Open Journal Systems, which provides a low-cost, feature-rich, customizable, easy to use, well established, and open-source journal publishing platform. Moving to this new system allows us to easily publish using a continuous submission model, so that articles appear online as they are accepted for publication, as well as provide a streamlined publication work-flow and centralized database.
Screenshot of the new JESBC web site
Our new journal site is now up and running! Check out http://journal.entsocbc.ca for complete open access to all articles, and stay tuned as more back issues of the society’s journal and quarterly bulletin archive are uploaded (going back to 1906!) and as we add DOI support and cross-referencing.
Our journal digitization effort is a huge project, and although we’ve made great headway, we could use your help (more on this soon)! We are looking for volunteers to assist with moving this content online to the new site. Contact Alex Chubaty (firstname.lastname@example.org) if you are interested in contributing time towards this project.
https://esc-sec.ca/wp-content/uploads/2012/09/jesbc_covers-2.png6001600Crystal Ernsthttp://esc-sec.ca/wp/wp-content/uploads/2017/01/ESC_logo-300x352.pngCrystal Ernst2012-09-12 09:00:542019-11-14 20:22:45Digitizing the Journal of the Entomological Society of British Columbia